Gff3Annotation

interface Gff3Annotation

An interface that describes the fields in a GFF3 record. For more information see http://gmod.org/wiki/GFF3/

Properties

attributes

attributes: undefined | Map <string, string>

A GFF3 field that is essentially an anything goes set of key value pairs describing anything anybody every wants to add to a GFF3 record.

end

end: number

id

id: string

phase

phase: undefined | None | None | None

A GFF3 field that describes the phase for CDS (coding sequence) annotations.

score

score: undefined | number

A GFF3 field that should describe the score of the annotation.

seqid

seqid: undefined | string

A GFF3 field: “The ID of the landmark used to establish the coordinate system for the current feature…”

source

source: undefined | string

A GFF3 field: “The source is a free text qualifier intended to describe the algorithm or operating procedure that generated this feature…”

start

start: number

strand

strand: undefined | Forward | Reverse | Unknown | Unoriented

A GFF3 field that describes the strand of the annotation.

type

type: undefined | string

A GFF3 field that is supposed to be “constrained to be either: (a) a term from the “lite” sequence ontology, SOFA; or (b) a SOFA accession number.” However, this is currently not enforced by SODA.