An interface that defines the initialization parameters for a Gff3Annotation.
attributes: undefined | Map <string, string>
A horrifying GFF3 field that is essentially an anything goes set of key value pairs describing anything anybody every wants to add to a GFF3 record.
end: undefined | number
The end position of the annotation in semantic coordinates (generally a position on a chromosome in base pairs).
id: undefined | string
A unique identifier for an Annotation object. If an ID is not provided, one will be automatically generated by SODA when the Annotation is instantiated.
phase: undefined | None | None | None
A GFF3 field that describes the phase for CDS (coding sequence) annotations.
row: undefined | number
This describes which horizontal row the Annotation will be rendered in a Chart, assuming that the y-positioning is not overwritten during a call to the glyph rendering API.
score: undefined | number
A GFF3 field that should describe the score of the annotation.
seqid: undefined | string
A GFF3 field: “The ID of the landmark used to establish the coordinate system for the current feature…”
source: undefined | string
A GFF3 field: “The source is a free text qualifier intended to describe the algorithm or operating procedure that generated this feature…”
start: undefined | number
The start position of the annotation in semantic coordinates (generally a position on a chromosome in base pairs).
strand: undefined | Forward | Reverse | Unknown | Unoriented
A GFF3 field that describes the strand of the annotation.
tag: undefined | string
An optional tag for the annotation. This can be thought of as a something of a secondary ID.
type: undefined | string
A GFF3 field that is supposed to be “constrained to be either: (a) a term from the “lite” sequence ontology, SOFA; or (b) a SOFA accession number.” However, this is currently not enforced by SODA.
width: undefined | number
The width of the annotation in semantic coordinates.