getAlignmentAnnotations

function getAlignmentAnnotations(config: AlignmentConfig): None

This returns a set of SequenceAnnotations defined such that the provided query sequence can be rendered in a Chart as if it were aligned to a chromosome. The matches, substitutions, gaps, and insertions are returned as separate objects. The idea here is that they can be rendered individually with different style parameters.

Parameters

• config: AlignmentConfig

Returns: None