Gff3Annotation
interface Gff3Annotation
An interface that describes the fields in a GFF3 record. For more information see http://gmod.org/wiki/GFF3/
Properties
attributes
attributes: undefined | Map <string, string>
A GFF3 field that is essentially an anything goes set of key value pairs describing anything anybody every wants to add to a GFF3 record.
end
end: number
The end coordinate of the Annotation.
id
id: string
A unique identifier for the Annotation.
phase
phase: undefined | None | None | None
A GFF3 field that describes the phase for CDS (coding sequence) annotations.
score
score: undefined | number
A GFF3 field that should describe the score of the annotation.
seqid
seqid: undefined | string
A GFF3 field: “The ID of the landmark used to establish the coordinate system for the current feature…”
source
source: undefined | string
A GFF3 field: “The source is a free text qualifier intended to describe the algorithm or operating procedure that generated this feature…”
start
start: number
The start coordinate of the Annotation.
strand
strand: undefined | Forward | Reverse | Unknown | Unoriented
A GFF3 field that describes the strand of the annotation.
type
type: undefined | string
A GFF3 field that is supposed to be “constrained to be either: (a) a term from the “lite” sequence ontology, SOFA; or (b) a SOFA accession number.” However, this is currently not enforced by SODA.